Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KICH | rs58664102 | chr11:105636760 | A/G | 0.00013 | 65 | 68.8 | 63.23 | 25.13 | KM Plot |
| KICH | rs58747252 | chr20:44340733 | A/C | 9.8E-5 | 63 | 66.1 | 17.22 | 77.8 | KM Plot |
| KICH | rs5884537 | chr7:63729205 | GTT/GTTT | 0.000819 | 62 | 67.47 | 30.67 | 0 | KM Plot |
| KICH | rs58922980 | chr2:137085511 | C/T | 8.84E-7 | 64 | 65.47 | 64.87 | 20.75 | KM Plot |
| KICH | rs59238900 | chr3:136786221 | T/C | 7.03E-14 | 64 | 63.63 | 68.8 | 10.83 | KM Plot |
| KICH | rs61817921 | chr1:221844629 | A/G | 1.14E-6 | 62 | 66.78 | 75.97 | 16.9 | KM Plot |
| KICH | rs61832568 | chr1:241452774 | C/T | 7.18E-7 | 62 | 63.23 | 76.38 | 16.9 | KM Plot |
| KICH | rs61988400 | chr14:91786229 | T/C | 3.62E-6 | 65 | 65.47 | 73.7 | 26.33 | KM Plot |
| KICH | rs61988401 | chr14:91789123 | T/A | 5.97E-6 | 63 | 66.78 | 73.7 | 26.33 | KM Plot |
| KICH | rs61988402 | chr14:91789140 | G/A | 4.65E-6 | 64 | 66.1 | 73.7 | 26.33 | KM Plot |
| KICH | rs61988403 | chr14:91791910 | G/A | 7.67E-6 | 62 | 66.1 | 73.7 | 26.33 | KM Plot |
| KICH | rs62140136 | chr2:80384306 | T/C | 1.13E-6 | 62 | 64.67 | 75.97 | 16.9 | KM Plot |
| KICH | rs6470136 | chr8:124097619 | A/G | 5.97E-7 | 64 | 66.1 | 66.97 | 16.9 | KM Plot |
| KICH | rs6544824 | chr2:45751139 | A/T | 5.15E-8 | 63 | 19.67 | 13.33 | 66.78 | KM Plot |
| KICH | rs6577095 | chr13:113252000 | G/A | 3.2E-5 | 64 | 66.78 | 17.32 | 46.95 | KM Plot |